top of page
image.png

Metabolomics is the comprehensive analysis of small molecules (metabolites) within biological systems, providing critical insight into cellular function, environmental interactions, and system- level responses. In our lab, we employ advanced liquid chromatography-mass spectrometry (LC–MS) platforms using high-resolution and high-sensitivity mass spectrometers including Orbitrap Fusion Lumos MS and QTrap 7500 MS to perform both untargeted metabolomics and targeted quantitative analysis. Untargeted metabolomics enables the broad, unbiased detection of metabolites, offering a global snapshot of metabolic diversity, while targeted approaches provide precise quantitative measurements of selected metabolites.

 

Together, these complementary strategies allow us to explore different metabolic pathways, identify novel metabolites, and understand how organisms respond to environmental and physiological changes. Our integrated analytical framework combines chemistry, biology, and bioinformatics to generate robust and reproducible metabolomics datasets across diverse biological systems

Our Research

In our lab, we use advanced metabolomics approaches to study marine organisms and microorganisms including corals, diatoms and phytoplankton. This is essential for understanding the dynamics of marine ecosystems. Beyond marine science, we collaborate widely with other labs and scientists to study non-marine systems across environmental, biomedical, and translational research fields. This includes the analysis of different types of biological samples including human biofluids, clinical samples, bacteria and cell cultures to study disease mechanisms, drug response, and metabolic perturbations.

Marine samples present unique analytical challenges: they are characterized by high salt content, extremely low concentrations of metabolites, and high levels of variability in microbial composition, metabolite classes, and concentrations. These factors complicate analysis by causing ion suppression in mass spectrometry, limiting detection sensitivity, and increasing variability. Additionally, many marine metabolites are thermolabile or photosensitive, requiring careful handling to preserve their integrity during sample preparation and analysis. To address these challenges, a central focus of our lab is the development and optimization of metabolomics workflows and methodologies for both targeted and untargeted approaches. We continuously refine sample preparation protocols, extraction techniques, chromatographic separation, and data processing pipelines to improve metabolite coverage, identification and annotation, sensitivity, and reproducibility. These methodological advancements enable high-quality comparative analyses across complex matrices, contributing to progress in the field and advancing marine and terrestrial biological and environmental research.

Our metabolomics work is closely integrated with other omics techniques, with key applications including: coral symbiosis and resilience under environmental stress and climate change; metabolic interactions between diatoms, phytoplankton, and their associated microbiomes; and marine microbial communities, with a focus on chemical signaling and metabolic exchange. Through these studies, we aim to elucidate how metabolic networks drive adaptation, ecological interactions, and biogeochemical processes in ocean systems. By integrating untargeted and targeted metabolomics approaches, we identify key metabolites and pathways that underpin biological responses to changing environmental conditions. In addition, our collaborations highlight the versatility of our metabolomics platform and its ability to address complex biological questions across scales—from molecular mechanisms to ecosystem-level processes. By combining analytical chemistry, advanced instrumentation, and bioinformatics, the lab serves as a hub for metabolomics-driven discovery and cross-disciplinary innovation.

Plain English Summary

Our lab studies small molecules (metabolites) to understand how biological systems function and respond to environmental changes. We use advanced LC–MS techniques for both broad detection and precise measurement of metabolites. A key focus is marine organisms and microorganisms such as corals and bacteria. We develop improved methods for sample preparation and analysis to increase accuracy and sensitivity. Our work supports research on ecosystem health, climate impacts, and microbial interactions. We also collaborate in biomedical and environmental studies, applying metabolomics to human health, disease research, and broader biological questions

Publications

Abdelrazig S, McCabe Á, Yasin A, Chaudhary R, Ochsenkühn MA, Scicchitano D, Amin SA. LC-MS Orbitrap-based metabolomics using a novel hybrid zwitterionic hydrophilic interaction liquid chromatography and rigorous metabolite identification reveals doxorubicin-induced metabolic perturbations in breast cancer cells. RSC Adv. 2025 Jun 19;15(26):20745-20759. doi: 10.1039/d5ra01044f. 

T. Venit, O. Sapkota, W.S. Abdrabou, P. Loganathan, R. Parischa, S.R. Mahmood, N.H. El Said, S. Sherif, S. Thomas, S. Abdelrazig, S.A. Amin, D. Bedognetti, Y. Idaghdour, M. Magzoub, P. Percipalle (2023). Positive regulation of oxidative phosphorylation by nuclear myosin 1 protects cells from metabolic reprogramming and tumorigenesis in mice. Nature Commun., 14, 6328.

Shibl AA, Denekew TW, Ahmad AR, Abdelrazig S, Leonor CE, Utenova L, et al. Integrative multi-omics analysis reveals oral microbiome-metabolome signatures of obesity. Cell Reports. 2026;45(2)

Moreno CM, Bibire I, Mustafina A, Abdelrazig S, Kottuparambil S, Bogosavljevic M, et al. Microbial community dynamics and first quantification of the toxin domoic acid in a eutrophic bay in the United Arab Emirates. Harmful Algae. 2025;149:102921.​

Team Members

Contact

Shady A. Amin
NYU Abu Dhabi, Saadiyat Island
C1-013
PO Box 129188
Abu Dhabi, United Arab Emirates

Lab Phone: +971-2-628-4582

bottom of page